CGH-Explorer

A program for visualization and analysis of array-CGH data

Ole Christian Lingjærde¹, Lars O. Baumbusch², Knut Liestøl¹, Ingrid K. Glad³ and Anne-Lise Børresen-Dale²

¹The Bioinformatics Group, Dept of Informatics, Norway

²Department of Genetics, Institute for Cancer Research, Norwegian Radium Hospital, Norway

³Department of Mathematics, University of Oslo, Norway

Bioinformatics (2005), vol 21(6), 821-822.

· Visualization of human array-CGH data

· Identification of DNA copy number errors using the Analysis of Copy Errors (ACE) algorithm

· Estimation of false discovery rate (FDR) for a sample of arrays

· Intutitive and easy-to-use graphical user interface

· Available as a Windows stand-alone program and as Java source code.

· Free for all users (academic and commercial)

To obtain the software, fill in the registration page.

Related links:

CGH-Miner: Calling Gains and losses in Array CGH data using the CLAC Method